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Multi-Omics Data Analysis
From data to actionable insights
Omics (proteomics, metabolomics, lipidomics, glycomics) experiments require sophisticated instruments and software platforms to analyze hundreds or thousands of molecules with confidence. Thermo Fisher Scientific offers a suite of software tools, which focus on accuracy and productivity, to assist with your laboratory's data analysis goals.
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What kind of software are you interested in?
Data acquisition
Your samples contain information, knowledge and value. To access these valuable insights, you need to ensure that you acquire the highest quality data possible.
The instrument control software applications, Tune and Method Editor, on Thermo Scientific mass spectrometers, ensure that you collect high-quality data. Learn more about the latest advancements in data acquisition.
Xcalibur software
Thermo Scientific Xcalibur software enables you to set up methods to acquire data as well as further review and report out.
Small molecule analysis
Identify known knowns, known unknowns and unknown unknowns, as well as gain structural insights into your compounds and biological pathways. Access high-quality libraries, curated MS and MSn spectra using Thermo Scientific software packages to streamline the challenges of small molecule analysis.
Compound Discoverer software
Thermo Scientific Compound Discoverer software streamlines unknown identification, determination of real differences between samples, and elucidation of biological pathways.
Recommended for the following workflows:
Mass Frontier Spectral Interpretation Software
Thermo Scientific Mass Frontier Spectral Interpretation Software helps simplify management, evaluation, and interpretation of mass spectral data for Thermo Scientific LC and GC mass spectrometers.
Recommended for the following workflows:
Analysis of unknowns
Streamline your small molecule unknown identification process with mzCloud, the most curated mass spectral fragmentation library. Even when you have no search results, you can use sub-structural matches for putative identification by employing mzLogic to rank proposals.
mzCloud mass spectral library
Covering a wide range of small molecule chemical diversity, this extensive and publicly available high-resolution MS and multi-stage MSn spectral library delivers powerful and confident unknown identification capabilities.
mzCloud is recommended for both targeted screening and research workflows using the Compound Discoverer and Mass Frontier Spectral Interpretation Software packages.
mzLogic data analysis algorithm
When there is no match from your spectral library, you can combine spectral library similarity and sub-structural information and search in a completely new way. The mzLogic algorithm leverages real-world fragmentation information to automatically rank and propose the best candidates for your true unknowns.
Recommend for the following workflows:
- Untargeted metabolomics
- Small molecule identification
Protein analysis software
Characterize and quantify proteins as well as identify unknown proteins and proteoforms using Thermo Scientific software for protein analysis.
Proteome Discoverer software
Thermo Scientific Proteome Discoverer software helps you identify and quantify proteins in complex biological samples.
Recommended for the following workflows:
- Iterative search strategies
- Multi-search engine comparison
- TMT SPS MS3
- Protein glycosylation
- Phosphoproteomics
- Top-down proteomics
- Crosslinking Mass Spectrometry
BioPharma Finder software
Screen, identify, and characterize your proteins with higher productivity and confidence. Confirm amino acid sequences, identify post-translational modifications (PTMs), or localize modifications using the automated top-down workflow. From intact protein through to peptide mapping and multi-attribute monitoring, the BioPharma Finder software helps you understand your therapeutics like never before.
Recommended for the following workflows:
ProSightPC software
Thermo Scientific ProsightPC software has been enhanced to add support for middle-down and bottom-up experiments, making it an all-around tool for identification and characterization of both intact proteins and peptides.
Recommended for the following workflows:
- Top-down protein MS/MS ID
- Elucidation of unknown PTMs
- Protein database curation
Lipid analysis software
Gain a better understanding of cellular physiology and pathology by identifying and quantifying lipids in your sample using Thermo Scientific software for lipid analysis.
Lipid Search software
Lipidomics is crucial to understanding cellular physiology and pathology, and lipid profiling for disease phenotype analysis is a rapidly growing area in translational medical research. LC/MS is a powerful technique for the identification and quantitation of cellular lipids.
Recommended for the following workflows:
Data acquisition
Your samples contain information, knowledge and value. To access these valuable insights, you need to ensure that you acquire the highest quality data possible.
The instrument control software applications, Tune and Method Editor, on Thermo Scientific mass spectrometers, ensure that you collect high-quality data. Learn more about the latest advancements in data acquisition.
Xcalibur software
Thermo Scientific Xcalibur software enables you to set up methods to acquire data as well as further review and report out.
Small molecule analysis
Identify known knowns, known unknowns and unknown unknowns, as well as gain structural insights into your compounds and biological pathways. Access high-quality libraries, curated MS and MSn spectra using Thermo Scientific software packages to streamline the challenges of small molecule analysis.
Compound Discoverer software
Thermo Scientific Compound Discoverer software streamlines unknown identification, determination of real differences between samples, and elucidation of biological pathways.
Recommended for the following workflows:
Mass Frontier Spectral Interpretation Software
Thermo Scientific Mass Frontier Spectral Interpretation Software helps simplify management, evaluation, and interpretation of mass spectral data for Thermo Scientific LC and GC mass spectrometers.
Recommended for the following workflows:
Analysis of unknowns
Streamline your small molecule unknown identification process with mzCloud, the most curated mass spectral fragmentation library. Even when you have no search results, you can use sub-structural matches for putative identification by employing mzLogic to rank proposals.
mzCloud mass spectral library
Covering a wide range of small molecule chemical diversity, this extensive and publicly available high-resolution MS and multi-stage MSn spectral library delivers powerful and confident unknown identification capabilities.
mzCloud is recommended for both targeted screening and research workflows using the Compound Discoverer and Mass Frontier Spectral Interpretation Software packages.
mzLogic data analysis algorithm
When there is no match from your spectral library, you can combine spectral library similarity and sub-structural information and search in a completely new way. The mzLogic algorithm leverages real-world fragmentation information to automatically rank and propose the best candidates for your true unknowns.
Recommend for the following workflows:
- Untargeted metabolomics
- Small molecule identification
Protein analysis software
Characterize and quantify proteins as well as identify unknown proteins and proteoforms using Thermo Scientific software for protein analysis.
Proteome Discoverer software
Thermo Scientific Proteome Discoverer software helps you identify and quantify proteins in complex biological samples.
Recommended for the following workflows:
- Iterative search strategies
- Multi-search engine comparison
- TMT SPS MS3
- Protein glycosylation
- Phosphoproteomics
- Top-down proteomics
- Crosslinking Mass Spectrometry
BioPharma Finder software
Screen, identify, and characterize your proteins with higher productivity and confidence. Confirm amino acid sequences, identify post-translational modifications (PTMs), or localize modifications using the automated top-down workflow. From intact protein through to peptide mapping and multi-attribute monitoring, the BioPharma Finder software helps you understand your therapeutics like never before.
Recommended for the following workflows:
ProSightPC software
Thermo Scientific ProsightPC software has been enhanced to add support for middle-down and bottom-up experiments, making it an all-around tool for identification and characterization of both intact proteins and peptides.
Recommended for the following workflows:
- Top-down protein MS/MS ID
- Elucidation of unknown PTMs
- Protein database curation
Lipid analysis software
Gain a better understanding of cellular physiology and pathology by identifying and quantifying lipids in your sample using Thermo Scientific software for lipid analysis.
Lipid Search software
Lipidomics is crucial to understanding cellular physiology and pathology, and lipid profiling for disease phenotype analysis is a rapidly growing area in translational medical research. LC/MS is a powerful technique for the identification and quantitation of cellular lipids.
Recommended for the following workflows:
Learn how you can use Thermo Scientific Mass Frontier software and an integrated software framework to translate high quality mass spectra into more confidently-assigned small molecule structures.