Minimum Yield Guarantee

Synthesis scales refer to the amount of starting material present, not the amount of final product produced. This is the same for all manufacturers of synthetic DNA. When a 50 nmole scale synthesis is specified, approximately 50 nmoles of the first base is added to the DNA synthesizer. For an average 25-mer, at least 25% of this starting material will result in failure sequences, hence it is not possible to produce 50 nmoles of full-length product from a 50 nmole scale synthesis. In addition, further losses occur during processing, transfer of material, and quality control.

Estimated nmole Yield
The table below shows estimated nmole yield for desalted oligos at the various starting synthesis scales. This table converts the OD units into nmole values for an oligo with an equal and even distribution of each base. The actual nmol conversion from OD for a specific oligo may be different based on the composition and distribution of each base within the oligo.

Approximate nmole Ending Yield at Each Starting Synthesis Scale

Oligo Length 25nmole (2OD) 50nmole (4OD) 200nmole (16OD)
20102080
2581664
306.613.252.8
355.611.244.8
4051040
454.5936
504832
603.26.425.6
702.85.622.4
802.44.819.2

Minimum Yields
When ordering custom oligos, remember that the scale of synthesis (25 nmol, 50 nmol, 200 nmol, 1 µmol, or 10 µmol) is the starting point for synthesis, not the guaranteed final amount. Oligonecleotide length, sequence, GC content, and coupling efficiencies can vary the yield of nmole amounts post-synthesis. Invitrogen guarantees the total yield of oligonucleotide as a minimum number of OD units. Purification by HPLC, PAGE, and Cartridge will also affect final product yield.

BASESSCALEDESALTED (OD)CARTRIDGE (OD)HPLC (OD)PAGE (OD)
≧2525 nmol2N/AN/AN/A
40 nmol2N/AN/AN/A
50 nmol4210.5
200 nmol1683*41
1 μmol502515*55
10 μmol*3500N/A15050
<2525 nmol1N/AN/AN/A
40 nmol2N/AN/AN/A
50 nmol221N/A*2
200 nmol88*131
1 μmol2020103
10 μmol*3200N/A10030

N/A : Not Available
*1 Guaranteed minimum OD yield for 7-10mer is 4.
*2 Guaranteed minimum OD yield not available
*3 Manufactured overseas
*4 Guaranteed minimum OD yield for 66-80mer is 2.
*5 Not available for 66-80mer


Electronic Codes

Format Code
TubesT
PlatesP

 

Synthesis ScaleCode
50 nmoles50N
200 nmoles200N
1 µmole1U

 

Purification Options Code
DesaltedDSL
CartridgeCOP
HPLCHPL
PAGEPAG

 

Modification Code
DeoxyadenineA
DeoxycytosineC
DeoxyguanidineG
ThymidineT
DeoxyuracilU
DeoxyinosineI
A-PhosphorothioateF
C-PhosphorothioateO
G-PhosphorothioateE
T-PhosphorothioateZ
A+C+GV
A+C+G+TN
A+T+GD
T+C+GB
A+T+CH
A+TW
C+GS
T+GK
A+CM
C+TY
A+GR

 

3’ ModificationCode
Amine®AMN
BiotinBIO
PhosphatePHO
ThiolTHL

 

5’ ModificationCode
General Modifications
AldehydeALD
Amine® (Primary)AMN
BiotinBIO
PhosphatePHO
ThiolTHL
Fluorescent Dye Modifications
FAMFAM
FluoresceinFLO
HEXHEX
ROXROX
TETTET
TAMRATAM
Molecular Probes™ Dyes
Alexa Fluor 488488
Alexa Fluor 532532
Alexa Fluor 546546
Alexa Fluor 555555
Alexa Fluor 594594
Alexa Fluor 647647
Alexa Fluor 660660
Alexa Fluor 750750
BODIPY® FLBDA
BODIPY® 530/550BDB
BODIPY® 493/503BDC
BODIPY® 558/569BDE
BODIPY® 564/570BDF
BODIPY® 576/589BDG
BODIPY® 581/591BDH
BODIPY® FL-XBDI
BODIPY® TR-XBDJ
BODIPY® TMRBDK
BODIPY® R6GBDL
BODIPY® R6G-XBDM
BODIPY® 630/650BDN
BODIPY® 650/665BDP
OREGON GREEN® 488OGC
OREGON GREEN® 488-XOGD
PACIFIC BLUE™ DyePFB
RHODAMINE GREEN™ DyeRGA
RHODAMINE GREEN™-XRGC
RHODAMINE RED™-XRRA
TEXAS RED®TXR
TEXAS RED®-XTRX

 


Pricing for Oligonucleotides

Rough Price of Oligonucleotides

Synthesis
Scale
Price
per base
Length
PurificationModification
Price
50 nmol60JPY20 merDesalted
(+0JPY)
None (+0JPY)1,200JPY
50 nmol60JPY
20 merCartridge
(+800JPY)
None (+0JPY)
2,000JPY
50 nmol60JPY
30 merCartridge
(+800JPY)
None (+0JPY)
8,800JPY
50 nmol60JPY
30 merHPLC
(+7,000JPY)
5’ Phosphate
(+8,000JPY)
16,800JPY

Please click here for information of delivery time.

Standard Price List (*Free shipping on All Orders)

Synthesis
Scale *1
Price
per base
DesaltedCartridgeHPLC *2PAGE *3
50 nmol60JPY0JPY800JPY7,000JPY7,500JPY
200 nmol120JPY0JPY800JPY7,000JPY10,000JPY
1 μmol500JPY0JPY3,000JPY12,000JPY12,000JPY
  1. “Synthesis scale” means the starting material volume. Final delivery material volume will change by base number and sequence. Please click here for minimum guarantee volume.
  2. HPLC can provide up to 65mer.
  3. Delivery time is 3weeks because performing in US site.

Value Oligo

Synthesis Scale *1Price per base
Desalted  
40 nmol *21000JPY
  1. “Synthesis scale” means the starting material volume.
  2. Minimum guarantee volume is same as 50n mol scale's one.
  3. 7-30mer, you can include mix oligonucleotides.
  4. Value oligo can provide non modification and desalted.

Oligonucleotides(Plate)

Synthesis
Scale
Price
per base
PurificationLengthDelivery
Formulation
50 nmol40JPYDesalted
7 - 80 merTE Solution
(100uM)
200 nmol80JPYDesalted
7 - 80 merTE Solution
(500uM)
  • Please contact to order support if you want to order more than 81mer or 11plates.
  • Invitrogen can provide desalted or cartridge puritication for plate oligonucleotides.
  • Please contact to order support if you want to order HPLC or PAGE purification for plate oligonucleotides.
  • You can order the greater than or equal 24 primers.

Dilution buffer : TE, (Option) Sterilized water, etc. Shipping plate format : Deep well plate, (Option) Half well plate or Micro well plate. Quality Control : Trityl monitoring, Capillary electrophoresis, Mass analysis, Absorbance determination(OD260).

Price List for Modifications

Modification

50 nmol

200 nmol

1 μmol

5'-Amine*1, *26,000JPY/oligo8,000JPY/oligo10,000JPY/oligo
5'-Thiol-14,000JPY/oligo23,000JPY/oligo
5'-Phosphate*28,000JPY/oligo10,000JPY/oligo12,000JPY/oligo
5'-Biotin*1, *28,000JPY/oligo10,000JPY/oligo15,000JPY/oligo
5'-HEX, TET, 6-FAM
10,000JPY/oligo12,000JPY/oligo15,000JPY/oligo
5'-Fluorescein
8,000JPY/oligo10,000JPY/oligo15,000JPY/oligo
5'-ROX*6-13,000JPY/oligo29,000JPY/oligo
5'-TAMRA*6-13,000JPY/oligo29,000JPY/oligo
5'-Texas Red*6
5'-Texas Red-X*6
-7,000JPY/oligo30,000JPY/oligo
5'-Alexa*6
350、405、430、488、514、532、546、555、568、594、633、647、660、680、700、750
10,000JPY/oligo13,000JPY/oligo18,000JPY/oligo
3'-Amine*1,*45,000JPY/oligo8,000JPY/oligo-
3'-Phosphate*47,000JPY/oligo10,000JPY/oligo12,000JPY/oligo
3'-Thiol*3,*6-14,000JPY/oligo-
3'-Biotin*1,*48,000JPY/oligo10,000JPY/oligo18,000JPY/oligo
Deoxyinosine*51,800JPY/modified base1,800JPY/modified base2,500JPY/modified base
Deoxyuracil*53,000JPY/modified base3,000JPY/modified base4,000JPY/modified base
Phosphorothioates(S-oligos)*5700JPY/modified base1,000JPY/modified base1,600JPY/modified base
Mixed BasesFree
  1. We are doing sale/synthesis under license from Wakunaga Pharmaceutical Co., Ltd.
  2. We cannot take cartridge purification order.
  3. If you order HPLC purification, you can choose the protecting group of terminal thiol.
    - Protection group "ON" (-SSR. do not treat deprotection reaction.)
    - Protection group "OFF" (-SH. treat deprotection reaction.)
    If you order desalted or cartridge purification, we can ship only protecting group “ON”.
  4. If you request cartridge purification, we can provide up to 55mer.
  5. The price of one base is including standard price and additional price.
    ex) 50nmol, Desalted, Deoxyinosine => 60JPY + 1,800JPY = 1,860JPY/modified base
  6. We can provide HPLC purification only.
  7. We cannot provide the modification of phosphorothioates on 3’terminal by structure issue of oligonucleotide.
    Please choose oligonucleotide the A or G or C or T on 3' terminal.
    If you request phosphorothioates modification on 5’ terminal, please contact to customer service.

<Order code for phosphorothioate>

 

Oxidized base

A

C

G

T

Phosphorothioate base

F

O

E

Z

If you want to request other modification, please contact to customer service.

Delivery schedule

Synthesis Scale

Purification

7~50mer

 51~80mer

81~100mer

50 nmol

Desalted

123

Cartridge

12

HPLC*1

55
(Up to 65mer)
200 nmol

Desalted

1*23

Cartridge

124

HPLC*1

55
(Up to 65mer)
1 μmol

Desalted

444

Cartridge

444

HPLC*1

55
(Up to 65mer)

(Business Day)

If the standard oligo is internally modified (inosine, uracil) or 5'terminal modified (amino, phosphoric acid, biotin, HEX, TET, FAM, Fluoro), please add one day for delivery.

Shipping schedule for Modified Oligo

Synthesis scale50 nmol200 nmol1000 nmol (=1μmol)
  PurificationDesaltedCartridgeeHPLCDesaltedCartridgeHPLCDesaltedCartridgeHPLC
Modified BasePhosphorothioate7-50 mer345345445
51-80 mer--
5'ModThiol*17-80 mer---45105610
Alexa7-65 mer--10--10--10
ROX/Tamra/Texas Red7-65 mer-----10--10
3'ModAmine7-80 mer45*25*345*25*3---
Phosphate7-80 mer45*25*345*25*355*25*3
Biotin7-80 mer45*25*345*25*355*25*3
Thiol*17-65 mer-----10---
  • *1 HPLC refined products can be selected from thiol without protecting groups (-SH, with deprotection treatment) and with protecting groups (-SSR, without deprotection treatment).
  • *1 Desalted and cartridge are only available with protecting groups (-SSR, without deprotection treatment).
  • *2 Only 7-55mer※2 Only 7-55mer
  • *3 All HPLC purification is available only for 65mer or less.

Value Oligo

Purification

7~30mer

40nmolDesalted1

(Business Day)

  1. Delivery schedule is subject to change.
  2. This delivery schedule is applied to the order by Web(-20:00), E-mail(-16:00), FAX(-14:00).

For all inquiries, please contact us.
Life Technologies Japan Ltd. 
Order support (Custom primer)
TEL:03-6832-6980
FAX:03-6832-9585
E-mail:jpprimerorder@invitrogen.com


Delivery Schedules for Oligonucleotides

Easy to spot, oligonucleotides are shipped in specially marked envelopes. Rapid, reliable delivery is ensured by overnight express. The table below highlights specific service and delivery time frames. Delivery schedules may be affected by demand fluctuations. We make every effort to deliver your high quality oligonucleotides as quickly as possible.

 

Tubes Delivery Schedule

Type of Oligonucleotides (50nmole scale)Ships withinDelivery on
Desalted unmodified
<=50 mer ordered before 4 p.m.
1 business day1 business day
Desalted unmodified
51-80 mer order before 8 p.m.
2 business days2 business day
3’ & 5’modified2 business days -3 business day -
HPLC purity oligonucleotides4 business days -
5 business day -

* Delivery time will change on delivery area.
* Delivery time is subject to change based on ordered oligos number and modification type.
* If you have any futher questions or concerns, please feel free to contact to customer service.

Plate Delivery Schedule

For plate orders containing disalted unmodified oligos of 50 mer or less.

Number of PlatesShips WithinDelivery on
(50nmol scale) -10 plates14 business days15 business days
(50nmol scale) 11- platesinquire 
(200nmol scale) -10 plates14 business days15 business days
(200nmol scale) 11- platesinquire 

* If you have any futher questions or concerns, please feel free to contact to customer service.


Oligo Quality Control

Key Features of our Unique Processes

Invitrogen uses a state of the art automated process to increase performance, speed and capacity. This means you get quality Custom Primers quickly and efficiently. Custom DNA Oligos are available as standard deoxynucleotides, modified based, 5’ modified nucleotides (including wide variety of fluorescent dyes, enzyme conjugates), and S-oligos for antisense studies. Five scales and four purity levels are available for DNA oligos in both tube and plate formats.

Our unique process includes 100% in-process trityl monitoring with up to 12 measurements taken for every base addition and additional CE, MS, and OD to verify yield. This comprehensive QC also applies to our Next-Day delivery service. Our oligo offering is complimented by easy online ordering and overnight shipping for rapid, reliable delivery. Consistent oligonucleotide quality is guaranteed and a comprehensive Certificate of Analysis accompanies each order, indicating quality, molecular weight, extinction coefficient, sequence, and melting temperature. No other oligo vendor provides superior performance or better value.

Additional Features of our Process

  • Final testing of statistically selected oligos by capillary electrophoresis or by mass spectroscopy to further ensure the quality.
  • Certificate of Analysis includes oligo name; scale of synthesis; sequence and length; melting temperature (TM); amount in ODs, µg, and nmole; and molecular weight and extinction coefficient calculated from your exact sequence, including modification.
  • Label information on each vial is durably printed on clear transparent stock to allow full view of contents.
  • Fluorescent oligos shipped in amber tubes to protect light sensitive oligos. Award winning Technical Services for complete workflow support.
  • Shipping in specially designed, easy-to-identify envelopes by express overnight delivery.

For Research Use Only. Not for use in diagnostic procedures.