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Synthesis scales refer to the amount of starting material present, not the amount of final product produced. This is the same for all manufacturers of synthetic DNA. When a 50 nmole scale synthesis is specified, approximately 50 nmoles of the first base is added to the DNA synthesizer. For an average 25-mer, at least 25% of this starting material will result in failure sequences, hence it is not possible to produce 50 nmoles of full-length product from a 50 nmole scale synthesis. In addition, further losses occur during processing, transfer of material, and quality control.
Estimated nmole Yield
The table below shows estimated nmole yield for desalted oligos at the various starting synthesis scales. This table converts the OD units into nmole values for an oligo with an equal and even distribution of each base. The actual nmol conversion from OD for a specific oligo may be different based on the composition and distribution of each base within the oligo.
Oligo Length | 25nmole (2OD) | 50nmole (4OD) | 200nmole (16OD) |
---|---|---|---|
20 | 10 | 20 | 80 |
25 | 8 | 16 | 64 |
30 | 6.6 | 13.2 | 52.8 |
35 | 5.6 | 11.2 | 44.8 |
40 | 5 | 10 | 40 |
45 | 4.5 | 9 | 36 |
50 | 4 | 8 | 32 |
60 | 3.2 | 6.4 | 25.6 |
70 | 2.8 | 5.6 | 22.4 |
80 | 2.4 | 4.8 | 19.2 |
Minimum Yields
When ordering custom oligos, remember that the scale of synthesis (25 nmol, 50 nmol, 200 nmol, 1 µmol, or 10 µmol) is the starting point for synthesis, not the guaranteed final amount. Oligonecleotide length, sequence, GC content, and coupling efficiencies can vary the yield of nmole amounts post-synthesis. Invitrogen guarantees the total yield of oligonucleotide as a minimum number of OD units. Purification by HPLC, PAGE, and Cartridge will also affect final product yield.
BASES | SCALE | DESALTED (OD) | CARTRIDGE (OD) | HPLC (OD) | PAGE (OD) |
---|---|---|---|---|---|
≧25 | 25 nmol | 2 | N/A | N/A | N/A |
40 nmol | 2 | N/A | N/A | N/A | |
50 nmol | 4 | 2 | 1 | 0.5 | |
200 nmol | 16 | 8 | 3*4 | 1 | |
1 μmol | 50 | 25 | 15*5 | 5 | |
10 μmol*3 | 500 | N/A | 150 | 50 | |
<25 | 25 nmol | 1 | N/A | N/A | N/A |
40 nmol | 2 | N/A | N/A | N/A | |
50 nmol | 2 | 2 | 1 | N/A*2 | |
200 nmol | 8 | 8*1 | 3 | 1 | |
1 μmol | 20 | 20 | 10 | 3 | |
10 μmol*3 | 200 | N/A | 100 | 30 |
N/A : Not Available
*1 Guaranteed minimum OD yield for 7-10mer is 4.
*2 Guaranteed minimum OD yield not available
*3 Manufactured overseas
*4 Guaranteed minimum OD yield for 66-80mer is 2.
*5 Not available for 66-80mer
Format | Code |
---|---|
Tubes | T |
Plates | P |
Synthesis Scale | Code |
---|---|
50 nmoles | 50N |
200 nmoles | 200N |
1 µmole | 1U |
Purification Options | Code |
---|---|
Desalted | DSL |
Cartridge | COP |
HPLC | HPL |
PAGE | PAG |
Modification | Code |
---|---|
Deoxyadenine | A |
Deoxycytosine | C |
Deoxyguanidine | G |
Thymidine | T |
Deoxyuracil | U |
Deoxyinosine | I |
A-Phosphorothioate | F |
C-Phosphorothioate | O |
G-Phosphorothioate | E |
T-Phosphorothioate | Z |
A+C+G | V |
A+C+G+T | N |
A+T+G | D |
T+C+G | B |
A+T+C | H |
A+T | W |
C+G | S |
T+G | K |
A+C | M |
C+T | Y |
A+G | R |
3’ Modification | Code |
---|---|
Amine® | AMN |
Biotin | BIO |
Phosphate | PHO |
Thiol | THL |
5’ Modification | Code |
---|---|
General Modifications | |
Aldehyde | ALD |
Amine® (Primary) | AMN |
Biotin | BIO |
Phosphate | PHO |
Thiol | THL |
Fluorescent Dye Modifications | |
FAM | FAM |
Fluorescein | FLO |
HEX | HEX |
ROX | ROX |
TET | TET |
TAMRA | TAM |
Molecular Probes™ Dyes | |
Alexa Fluor 488 | 488 |
Alexa Fluor 532 | 532 |
Alexa Fluor 546 | 546 |
Alexa Fluor 555 | 555 |
Alexa Fluor 594 | 594 |
Alexa Fluor 647 | 647 |
Alexa Fluor 660 | 660 |
Alexa Fluor 750 | 750 |
BODIPY® FL | BDA |
BODIPY® 530/550 | BDB |
BODIPY® 493/503 | BDC |
BODIPY® 558/569 | BDE |
BODIPY® 564/570 | BDF |
BODIPY® 576/589 | BDG |
BODIPY® 581/591 | BDH |
BODIPY® FL-X | BDI |
BODIPY® TR-X | BDJ |
BODIPY® TMR | BDK |
BODIPY® R6G | BDL |
BODIPY® R6G-X | BDM |
BODIPY® 630/650 | BDN |
BODIPY® 650/665 | BDP |
OREGON GREEN® 488 | OGC |
OREGON GREEN® 488-X | OGD |
PACIFIC BLUE™ Dye | PFB |
RHODAMINE GREEN™ Dye | RGA |
RHODAMINE GREEN™-X | RGC |
RHODAMINE RED™-X | RRA |
TEXAS RED® | TXR |
TEXAS RED®-X | TRX |
Synthesis Scale | Price per base | Length | Purification | Modification | Price |
50 nmol | 60JPY | 20 mer | Desalted (+0JPY) | None (+0JPY) | 1,200JPY |
50 nmol | 60JPY | 20 mer | Cartridge (+800JPY) | None (+0JPY) | 2,000JPY |
50 nmol | 60JPY | 30 mer | Cartridge (+800JPY) | None (+0JPY) | 8,800JPY |
50 nmol | 60JPY | 30 mer | HPLC (+7,000JPY) | 5’ Phosphate (+8,000JPY) | 16,800JPY |
Please click here for information of delivery time.
Synthesis Scale *1 | Price per base | Desalted | Cartridge | HPLC *2 | PAGE *3 |
50 nmol | 60JPY | 0JPY | 800JPY | 7,000JPY | 7,500JPY |
200 nmol | 120JPY | 0JPY | 800JPY | 7,000JPY | 10,000JPY |
1 μmol | 500JPY | 0JPY | 3,000JPY | 12,000JPY | 12,000JPY |
Synthesis Scale *1 | Price per base |
Desalted | |
40 nmol *2 | 1000JPY |
Synthesis Scale | Price per base | Purification | Length | Delivery Formulation |
50 nmol | 40JPY | Desalted | 7 - 80 mer | TE Solution (100uM) |
200 nmol | 80JPY | Desalted | 7 - 80 mer | TE Solution (500uM) |
Dilution buffer : TE, (Option) Sterilized water, etc. Shipping plate format : Deep well plate, (Option) Half well plate or Micro well plate. Quality Control : Trityl monitoring, Capillary electrophoresis, Mass analysis, Absorbance determination(OD260).
Modification | 50 nmol | 200 nmol | 1 μmol |
---|---|---|---|
5'-Amine*1, *2 | 6,000JPY/oligo | 8,000JPY/oligo | 10,000JPY/oligo |
5'-Thiol | - | 14,000JPY/oligo | 23,000JPY/oligo |
5'-Phosphate*2 | 8,000JPY/oligo | 10,000JPY/oligo | 12,000JPY/oligo |
5'-Biotin*1, *2 | 8,000JPY/oligo | 10,000JPY/oligo | 15,000JPY/oligo |
5'-HEX, TET, 6-FAM | 10,000JPY/oligo | 12,000JPY/oligo | 15,000JPY/oligo |
5'-Fluorescein | 8,000JPY/oligo | 10,000JPY/oligo | 15,000JPY/oligo |
5'-ROX*6 | - | 13,000JPY/oligo | 29,000JPY/oligo |
5'-TAMRA*6 | - | 13,000JPY/oligo | 29,000JPY/oligo |
5'-Texas Red*6 5'-Texas Red-X*6 | - | 7,000JPY/oligo | 30,000JPY/oligo |
5'-Alexa*6 350、405、430、488、514、532、546、555、568、594、633、647、660、680、700、750 | 10,000JPY/oligo | 13,000JPY/oligo | 18,000JPY/oligo |
3'-Amine*1,*4 | 5,000JPY/oligo | 8,000JPY/oligo | - |
3'-Phosphate*4 | 7,000JPY/oligo | 10,000JPY/oligo | 12,000JPY/oligo |
3'-Thiol*3,*6 | - | 14,000JPY/oligo | - |
3'-Biotin*1,*4 | 8,000JPY/oligo | 10,000JPY/oligo | 18,000JPY/oligo |
Deoxyinosine*5 | 1,800JPY/modified base | 1,800JPY/modified base | 2,500JPY/modified base |
Deoxyuracil*5 | 3,000JPY/modified base | 3,000JPY/modified base | 4,000JPY/modified base |
Phosphorothioates(S-oligos)*5 | 700JPY/modified base | 1,000JPY/modified base | 1,600JPY/modified base |
Mixed Bases | Free |
<Order code for phosphorothioate> | ||||
Oxidized base | A | C | G | T |
Phosphorothioate base | F | O | E | Z |
If you want to request other modification, please contact to customer service.
Synthesis Scale | Purification | 7~50mer | 51~80mer | 81~100mer |
---|---|---|---|---|
50 nmol | Desalted | 1 | 2 | 3 |
Cartridge | 1 | 2 | ― | |
HPLC*1 | 5 | 5 (Up to 65mer) | ― | |
200 nmol | Desalted | 1* | 2 | 3 |
Cartridge | 1 | 2 | 4 | |
HPLC*1 | 5 | 5 (Up to 65mer) | ― | |
1 μmol | Desalted | 4 | 4 | 4 |
Cartridge | 4 | 4 | 4 | |
HPLC*1 | 5 | 5 (Up to 65mer) | ― |
(Business Day)
If the standard oligo is internally modified (inosine, uracil) or 5'terminal modified (amino, phosphoric acid, biotin, HEX, TET, FAM, Fluoro), please add one day for delivery.
Synthesis scale | 50 nmol | 200 nmol | 1000 nmol (=1μmol) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Purification | Desalted | Cartridgee | HPLC | Desalted | Cartridge | HPLC | Desalted | Cartridge | HPLC | ||
Modified Base | Phosphorothioate | 7-50 mer | 3 | 4 | 5 | 3 | 4 | 5 | 4 | 4 | 5 |
51-80 mer | - | - | |||||||||
5'Mod | Thiol*1 | 7-80 mer | - | - | - | 4 | 5 | 10 | 5 | 6 | 10 |
Alexa | 7-65 mer | - | - | 10 | - | - | 10 | - | - | 10 | |
ROX/Tamra/Texas Red | 7-65 mer | - | - | - | - | - | 10 | - | - | 10 | |
3'Mod | Amine | 7-80 mer | 4 | 5*2 | 5*3 | 4 | 5*2 | 5*3 | - | - | - |
Phosphate | 7-80 mer | 4 | 5*2 | 5*3 | 4 | 5*2 | 5*3 | 5 | 5*2 | 5*3 | |
Biotin | 7-80 mer | 4 | 5*2 | 5*3 | 4 | 5*2 | 5*3 | 5 | 5*2 | 5*3 | |
Thiol*1 | 7-65 mer | - | - | - | - | - | 10 | - | - | - |
Value Oligo | Purification | 7~30mer |
---|---|---|
40nmol | Desalted | 1 |
(Business Day)
For all inquiries, please contact us.
Life Technologies Japan Ltd.
Order support (Custom primer)
TEL:03-6832-6980
FAX:03-6832-9585
E-mail:jpprimerorder@invitrogen.com
Easy to spot, oligonucleotides are shipped in specially marked envelopes. Rapid, reliable delivery is ensured by overnight express. The table below highlights specific service and delivery time frames. Delivery schedules may be affected by demand fluctuations. We make every effort to deliver your high quality oligonucleotides as quickly as possible.
Type of Oligonucleotides (50nmole scale) | Ships within | Delivery on |
---|---|---|
Desalted unmodified <=50 mer ordered before 4 p.m. | 1 business day | 1 business day |
Desalted unmodified 51-80 mer order before 8 p.m. | 2 business days | 2 business day |
3’ & 5’modified | 2 business days - | 3 business day - |
HPLC purity oligonucleotides | 4 business days - | 5 business day - |
* Delivery time will change on delivery area.
* Delivery time is subject to change based on ordered oligos number and modification type.
* If you have any futher questions or concerns, please feel free to contact to customer service.
For plate orders containing disalted unmodified oligos of 50 mer or less.
Number of Plates | Ships Within | Delivery on |
---|---|---|
(50nmol scale) -10 plates | 14 business days | 15 business days |
(50nmol scale) 11- plates | inquire | |
(200nmol scale) -10 plates | 14 business days | 15 business days |
(200nmol scale) 11- plates | inquire |
* If you have any futher questions or concerns, please feel free to contact to customer service.
Invitrogen uses a state of the art automated process to increase performance, speed and capacity. This means you get quality Custom Primers quickly and efficiently. Custom DNA Oligos are available as standard deoxynucleotides, modified based, 5’ modified nucleotides (including wide variety of fluorescent dyes, enzyme conjugates), and S-oligos for antisense studies. Five scales and four purity levels are available for DNA oligos in both tube and plate formats.
Our unique process includes 100% in-process trityl monitoring with up to 12 measurements taken for every base addition and additional CE, MS, and OD to verify yield. This comprehensive QC also applies to our Next-Day delivery service. Our oligo offering is complimented by easy online ordering and overnight shipping for rapid, reliable delivery. Consistent oligonucleotide quality is guaranteed and a comprehensive Certificate of Analysis accompanies each order, indicating quality, molecular weight, extinction coefficient, sequence, and melting temperature. No other oligo vendor provides superior performance or better value.
Additional Features of our Process
For Research Use Only. Not for use in diagnostic procedures.