OncoScan Console 1.3 Software

OncoScan Console 1.3 is the original analysis software for OncoScan CNV and OncoScan CNV Plus assays.

Chromosomal Analysis Suite (ChAS) software is our most up-to-date analysis software with improved functionality and content, updated security, and the most current library files. ChAS is the preferred analysis software for OncoScan CNV and CNV Plus assays.

Visit the ChAS webpage to learn more.

• Runs TuScan analysis algorithm to determine copy number for samples processed using OncoScan CNV and OncoScan CNV Plus assays
  • Provides copy number in log and linear scale
  • Algorithmically identifies diploid regions and uses them to properly center the log ratios
  • Identifies regions of loss of heterozygosity (LOH) including regions of copy neutral LOH
  • In some cases, provides an estimate of the percent of aberrant cells in the sample and estimates the copy number change in just the aberrant cell population
  • For OncoScan CNV Plus Assay, run Affymetrix' somatic mutation algorithm to identify the presence of key somatic mutations
• Displays relevant QC metrics, including the ability to apply custom thresholds to identify outlier samples
• Uses "signature SNPs" to identify potential errors in channel identification and sample pairing during analysis set-up
• Supports the download of the necessary analysis and annotation files from NetAffx