Advancing the pace of cryo-electron tomography research 

The Thermo Scientific Arctis Cryo-PFIB features a state-of-the-art plasma ion source, an automated sample loading system, an integrated fluorescence microscope, and low contamination rates, allowing more efficient preparation of cryo-lamellae for high-quality tomography samples. The system enclosure, designed with biosafety in mind, protects the microscope assembly from the laboratory environment.

Cryo ET workflow with Arctis Cryo-PFIB


Arctis Cryo-Plasma-FIB benefits

Correlation to light microscopy and relation in TEM

“On-board” integrated fluorescence microscope (iFLM) allows the same area to be observed with light, ion, or electron beams. Specially designed TomoGrids always ensure correct lamella alignment to the tomographic tilt axis, from initial milling through high-resolution TEM imaging.

High-quality lamellae with consistent thickness

Plasma source provides multiple ion species (xenon, oxygen, argon) for high-quality lamella preparation without gallium implantation. An ultra-clean working environment is ensured for multiple days through the proven combination of a compact sample chamber and a dedicated cryo-box for shielding against water condensation.

Automation and connectivity for cryo-tomography

The Autoloader enables robotic sample handling for up to 12 grids, provides direct connectivity to the cryo-TEM and minimizes sample contamination risks. Set up milling runs from anywhere via a web-based user interface and perform autonomous, multi-day jobs for automated lamella preparation. Plasma source enables high milling rates for fast, large-volume material removal.


Arctis Cryo-Plasma-FIB key features

Plasma focused ion beam (PFIB) for high quality lamellae production

The Arctis Cryo-PFIB can switch between three ion species (xenon, argon, and oxygen) thanks to its fast switchable plasma ion source, offering outstanding performance for large volume material removal as well as precision milling. PFIB technology enables applications not covered by liquid metal ion source (LMIS) FIB systems. For example, it is possible to use the different milling properties of the three available ion beams to produce a high-quality lamella while avoiding gallium implantation effects.

Integrated fluorescence microscope (iFLM)

The Arctis Cryo-PFIB includes an integrated wide-field fluorescence light microscope (Thermo Scientific iFLM Correlative System), which enables fluorescence imaging at the electron/ion beam coincidence point. Fluorescence imaging for targeting, intermediate verification, and final target confirmation can easily be done before, in-between, and after the ion milling without moving the stage. The iFLM is set up for epifluorescent imaging and can be used in reflection and fluorescence mode; the 180° alpha tilt capability of the CompuStage allows imaging of the top and bottom surfaces of the sample, which can be helpful for thick samples.

System enclosure for BSL-3 labs

The Arctis Cryo-PFIB comes with an environmental enclosure and integrated service hoist. A system height of 2.6 meters allows the instrument to fit into standard laboratories. The enclosure surface is designed to be easily wiped down, and for higher biosafety level labs, a 60C heat decontamination solution for biosafety labs (e.g. BSL-3) is available.

Autoloader

The Autoloader enables robotic sample loading and unloading for up to 12 grids (TomoGrids or AutoGrids), facilitating transfer to the cryo-TEM while minimizing sample damage and contamination risks. In the new web-based user interface loaded grids are first mapped and inspected. Subsequently, lamella positions are chosen, and milling parameters are defined. Milling work is carried out autonomously. Depending on the specimen, the plasma source enables high milling rates for fast, large-volume material removal.

 

The Autoloader cassette provides a protected environment for the delicate cryo-lamellae samples. The cassette is loaded into a capsule docked to the Autoloader, which can be interchanged between the Arctis Cryo-PFIB and  Krios or Glacios Cryo-TEMs.

TomoGrids

Specially designed TomoGrids are specifically made for the cryo-tomography workflow and have two flat sides facing each other. These sides prevent misalignment during loading into the cryo-TEM and always ensure proper orientation of the lamella axis with respect to the TEM tilt axis. With TomoGrids, the entire available lamella area can be utilized for data acquisition.

Remote operation and automated lamella preparation

The Arctis Cryo-PFIB is designed for fast, reliable, and reproducible production of in-situ cryo-lamellae. Once the samples have been loaded, the lamella production process can be set up remotely from a web-based control interface. You can batch-screen grids, perform correlative imaging, and set up lamella preparation for multiple sites on multiple grids. This will then be executed autonomously via automated milling software.

Cryo-lamellae produced by Arctis Cryo-Plasma-FIB 
as viewed within a Krios G4 Cryo-TEM.

Fully automated cryo-lamellae production of multiple lamellae
including final polishing steps. Lamellae prepared with AutoTEM Cryo on Arctis Cryo-PFIB.

Watch on demand to learn more about the Arctis Cryo-Plasma-FIB, including: 

  • How the Arctis Cryo-PFIB is used for sample preparation in cryo-electron tomography 
  • How to transfer samples to a cryo-TEM using the connected cryo-tomography workflow with an Autoloader and TomoGrids 
  • How cryo-electron tomography enables insights into intact cellular environments  

Collaborations are the heart of cutting-edge cryo-EM

"One of the things that I find exciting about Arctis [Cryo-PFIB] is the degree to which it is an automated workflow. And so, this ability to have it running essentially unsupervised and produce high quality, large numbers of lamella is transformational."

Jim Naismith, Director of The Rosalind Franklin Institute and key collaborator on the development of the Thermo Scientific Arctis Cryo-PFIB.

 

Thermo Fisher Scientific and The Rosalind Franklin Institute have been working together since 2019 to determine what’s next for cryo-EM. Through this partnership, we developed and built the Thermo Scientific Arctis Cryo-PFIB.


Technical specifications

Arctis Cryo-Plasma-FIB Datasheet

iFLM Correlative System

Cryo-EM in Biosafety Facilities