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Qualifying DNA preparations for next-generation sequencing (NGS)
Prior to committing the effort and resources required for next-generation sequencing (NGS), it’s important for researchers to be able to quantify and assess the quality of the DNA starting material. In a 2013 publication, Simbolo et al. reported a reliable and cost-effective method to qualify various DNA preparations for NGS, including those derived from frozen tissue and FFPE samples. Of the instruments they tested, their data showed that DNA quantification results obtained using the Qubit® Fluorometer were highly reproducible and were consistent with qPCR data for DNA quantity—even for partially degraded DNA from FFPE samples.
Detection and quantitation of nucleic acids are vital to many biological studies. Historically, DNA and RNA have been quantified using spectrophotometry to measure absorbance at 260 nm. Although this method is most commonly used, it can be unreliable and inaccurate.
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