Applied Biosystems genetic analyzers are a trusted standard for Sanger sequencing and fragment analysis by capillary electrophoresis (CE). Our instruments add simplicity, scalability, and speed to your workflow, enabling you to analyze your most difficult samples with complete confidence. Versatile and innovative, our systems have been designed with you in mind to meet the demands of your genetic analysis needs, whether you are running a few samples or need larger scale options.


Low to high sample throughput—choose the genetic analyzer that is right for you
 

 

Lowest sample throughput, easy-to-use, flexible system

Medium sample throughput, basic and automated operation system

Maximum throughput, scalability, and flexibility

 SeqStudio Genetic Analyzer3500 Series Genetic AnalyzerRefreshed 3730 Series Genetic Analyzer
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Number of capillaries48 (3500), 24 (3500xL)48 (3730), 96 (3730xl)
Ease of useSimpleEasyModerate
Number of dyes665
Capillary array length (cm)Integrated into click-in cartridge36, 5036, 50
RFIDYesYesNo
Polymer typePOP-1 integrated into click-in cartridgePOP-6, POP-7, POP-4*POP-6, POP-7
Sample capacity

12 standard 8-strip tubes
1 standard 96-well  plate 

2 sample plates (96- or 384-well)16 sample plates (96- or 384- well)
Integrated plate stackerNoNoYes
ApplicationsSequencing + fragment analysis on same runSequencing, fragment analysisSequencing, fragment analysis
Minimum run time30 min30 min20 min
Sequencing read length (bp)800At least 850900
Maximum sequencing throughput (base pair reads/day) 67k

138k (3500), 403k
(3500xL)

1.38 M (3730), 2.76 M
(3730xL)

Maximum fragment throughput (samples/day)** 192384 (3500), 1,152
(3500xL)
3,456 (3730), 6,912
(3730xl)
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* POP-4 is generally only used with HID applications and requires GeneMapper ID-X Software for analysis.
** 96 capillaries are not recommended for fragment analysis.


Genetic analyzers ready for your regulatory and industry needs
 

Capillary electrophoresis instruments for clinical use

3500xL Dx Genetic Analyzer for in vitro diagnostic use

CE-IVD and IVDR compliant

3500xL Dx Genetic Analyzer ›

Capillary electrophoresis instruments for microbial identification

SeqStudio QST and Flex PA systems for rapid microbial identification

SeqStudio Series PA genetic analyzers ›


SeqStudio Series genetic analyzers
 

The Applied Biosystems SeqStudio Series systems deliver the high quality and reliable performance of Sanger sequencing and fragment analysis that scientists need, while leveraging design improvements and technological advances for increased flexibility, easier operation, enhanced connectivity, and remote serviceability.

With a wide range of applications from simple, targeted sequencing to identification of the latest SARS variant of concern, SeqStudio Series instruments help you to achieve freedom and peace of mind, providing extra time in your day to do what you do best: answering the big scientific questions.

Learn more about SeqStudio Family enabled applications. Download the SeqStudio Family Application Guide ›

For a low-scale, cost-effective option: Discover SeqStudio ›
For a mid-scale, efficient and flexible option: Discover SeqStudio Flex ›

Two capillary electrophoresis instruments for genetic analysis


Get the most out of your genetic analyzer

Capillary Electrophoresis instruments

Get more out of your instrument—learn more CE applications

CE-enabled applications ›

Capillary Electrophoresis instruments

Software solutions for viewing and interpreting CE results

Find software for your needs ›

Applied Biosystems Capillary Electrophoresis (CE) reagents and kits

Reagents & kits for Sanger sequencing and fragment analysis

Get them here ›

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Get bite-sized answers to your everyday Sanger sequencing and fragment analysis questions

Learn about the history of sequencing and how to pick the right platform for your research needs

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