| Compare RNA and protein kinetics in the same cell | Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH | 2022 |
| Analyze mRNA expression at the single-cell level | Wnt activation promotes memory T cell polyfunctionality via epigenetic regulator PRMT1 | 2022 |
| Analyze mRNA expression at the single-cell level | Single-cell nucleic acid profiling in droplets (SNAPD) enables high-throughput analysis of heterogeneous cell populations | 2021 |
| Evaluate viral RNA in infected cells | Selective cell death in HIV-1-infected cells by DDX3 inhibitors leads to depletion of the inducible reservoir | 2021 |
| Analyze mRNA expression at the single-cell level | An Early Myelosuppression in the Acute Mouse Sepsis Is Partly Outcome-Dependent | 2021 |
| Analyze mRNA expression at the single-cell level | Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers | 2021 |
| Analyze mRNA expression at the single-cell level | High-Oxygen Submersion Fetal Thymus Organ Cultures Enable FOXN1-Dependent and -Independent Support of T Lymphopoiesis | 2021 |
| Analyze mRNA expression at the single-cell level | Impaired Immune Function in Patients With Chronic Postsurgical Hypoparathyroidism: Results of the EMPATHY Study | 2021 |
| Analyze mRNA expression at the single-cell level | RNA Flow Cytometry for the Study of T Cell Metabolism | 2021 |
| Analyze mRNA expression at the single-cell level | Impaired Immune Function in Patients With Chronic Postsurgical Hypoparathyroidism: Results of the EMPATHY Study | 2021 |
| Analyze mRNA expression at the single-cell level | A Novel Branched DNA-Based Flowcytometric Method for Single-Cell Characterization of Gene Therapy Products and Expression of Therapeutic Genes | 2021 |
| Evaluate viral RNA in infected cells | Intracellular Staphylococcus aureus triggers pyroptosis and contributes to inhibition of healing due to perforin-2 suppression | 2021 |
| Evaluate viral RNA in infected cells | Immune‐Mobilizing Monoclonal T Cell Receptors Mediate Specific and Rapid Elimination of Hepatitis B–Infected Cells | 2020 |
| Evaluate viral RNA in infected cells | Oropouche Virus Infects, Persists and Induces IFN Response in Human Peripheral Blood Mononuclear Cells as Identified by RNA PrimeFlow™ and qRT-PCR Assays | 2020 |
| Analyze mRNA expression at the single-cell level | Staphylococcus epidermidis Boosts Innate Immune Response by Activation of Gamma Delta T Cells and Induction of Perforin-2 in Human Skin | 2020 |
| Analyze mRNA expression at the single-cell level | Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities | 2020 |
| Analyze mRNA expression at the single-cell level | CpG Site-Specific Regulation of Metallothionein-1 Gene Expression | 2020 |
| Evaluate viral RNA in infected cells | Detection of Epstein–Barr Virus in Periodontitis: A Review of Methodological Approaches | 2020 |
| Analyze mRNA expression at the single-cell level | 1,25-Dihydroxyvitamin D3 Restrains CD4+ T Cell Priming Ability of CD11c+ Dendritic Cells by Upregulating Expression of CD31 | 2019 |
| Analyze RNA and protein kinetics in the same cell | Application of Imaging Flow Cytometry for the Characterization of Intracellular Attributes in Chinese Hamster Ovary Cell Lines at the Single Cell Level | 2019 |
| Analyze mRNA expression at the single-cell level | Virally-vectored vaccine candidates against white-nose syndrome induce anti-fungal immune response in little brown bats (Myotis lucifugus) | 2019 |
| Analyze mRNA expression at the single-cell level | Mitochondrial mass governs the extent of T cell senescence | 2019 |
| Analyze mRNA expression at the single-cell level | Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses | 2019 |
| Analyze mRNA expression at the single-cell level | Regulation of membrane phospholipid asymmetry by Notch-mediated flippase expression controls the number of intraepithelial TCRαβ+CD8αα+ T cells | 2019 |
| Analyze mRNA expression at the single-cell level | SIV infection modulates CD94 (KLRD1)+ NK cells in rhesus macaques | 2019 |
| Analyze mRNA expression at the single-cell level | The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells | 2019 |
| Evaluate viral RNA in infected cells | Identification of HIV transmitting CD11c+ human epidermal dendritic cells | 2019 |
| Analyze mRNA expression at the single-cell level | Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors | 2019 |
| Analyze mRNA expression at the single-cell level | Metabolic requirements of human pro-inflammatory B cells in aging and obesity | 2019 |
| Analyze mRNA expression at the single-cell level | Altered differentiation is central to HIV-specific
CD4+ T cell dysfunction in progressive disease | 2019 |
| Evaluate viral RNA in infected cells | In vitro method to evaluate virus competition between BVDV-1 and BVDV-2 strains using the PrimeFlow RNA assay | 2019 |
| Analyze mRNA expression at the single-cell level | Bhlhe40 and Bhlhe41 transcription factors regulate alveolar macrophage self‐renewal and identity | 2019 |
| Evaluate viral RNA in infected cells | Latency reversal agents affect differently the latent reservoir present in distinct CD4+ T subpopulations | 2019 |
| Analyze RNA and protein kinetics in the same cell | Activation Receptor–Dependent IFN-γ Production by NK Cells Is Controlled by Transcription, Translation, and the Proteasome | 2019 |
| Analyze mRNA expression at the single-cell level | The Transcription Factor Bhlhe40 Programs Mitochondrial Regulation of Resident CD8+ T Cell Fitness and Functionality | 2019 |
| Analyze mRNA expression at the single-cell level | Framework engineering to produce dominant T cell receptors with enhanced antigen-specific function | 2019 |
| Analyze mRNA expression at the single-cell level | Adenosine mediates functional and metabolic suppression of peripheral and tumor-infiltrating CD8+ T cells | 2019 |
| Analyze mRNA expression at the single-cell level | Conversion of antigen-specific effector/memory T cells into Foxp3-expressing Treg cells by inhibition of CDK8/19 | 2019 |
| Analyze mRNA expression at the single-cell level | Cancer-Cell-Intrinsic cGAS Expression Mediates Tumor Immunogenicity | 2019 |
| Analyze mRNA expression at the single-cell level | RORγt inhibition selectively targets IL-17 producing iNKT and γδ-T cells enriched in Spondyloarthritis patients | 2019 |
| Evaluate viral RNA in infected cells | Differential and convergent utilization of autophagy components by positive-strand RNA viruses | 2019 |
| Analyze mRNA expression at the single-cell level | Single cell analyses reveal specific distribution of anti‐bacterial molecule Perforin‐2 in human skin and its modulation by wounding and Staphylococcus aureus infection | 2019 |
| Analyze RNA and protein kinetics in the same cell | A Multiparameter Flow Cytometry Analysis Panel to Assess CD163 mRNA and Protein in Monocyte and Macrophage Populations in Hyperinflammatory Diseases | 2019 |
| Analyze mRNA expression at the single-cell level | Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations | 2019 |
| Analyze mRNA expression at the single-cell level | Diverse Immunomodulatory Effects of Individual IFNα Subtypes on Virus-Specific Cd8+ T Cell Responses | 2019 |
| Analyze mRNA expression at the single-cell level | Endothelial toll‐like receptor 4 maintains lung integrity via epigenetic suppression of p16INK4a | 2019 |
| Analyze RNA and protein kinetics in the same cell | CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis | 2019 |
| Analyze mRNA expression at the single-cell level | Mixed chimerism established by hematopoietic stem cell transplantation is maintained by host and donor T regulatory cells | 2019 |
| Analyze mRNA expression at the single-cell level | GNAI1 and GNAI3 Reduce Colitis-Associated Tumorigenesis in Mice by Blocking IL6 Signaling and Downregulating Expression of GNAI2 | 2019 |
| Detect microRNA (miRNA) | MicroRNA-155 expression suggests a sex disparity in innate lymphoid cells at the single-cell level | 2019 |
| Detect microRNA (miRNA) | miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity | 2019 |
| Analyze mRNA expression at the single-cell level | Discovering metabolic disease gene interactions by correlated effects on cellular morphology | 2019 |
| Analyze mRNA expression at the single-cell level | Cross-Talk between Myeloid-Derived Suppressor Cells and Mast Cells Mediates Tumor-Specific Immunosuppression in Prostate Cancer | 2018 |
| Analyze RNA and protein kinetics in the same cell | Prostaglandin D2 amplifies lupus disease through basophil accumulation in lymphoid organs | 2018 |
| Analyze RNA and protein kinetics in the same cell | Type-I interferons inhibit interleukin-10 signaling and favor type 1 diabetes development in NOD mice | 2018 |
| Analyze RNA and protein kinetics in the same cell | Regulatory T cells control endothelial chemokine production and migration of T cells into intestinal tumors of APCmin/+ mice | 2018 |
| Analyze RNA and protein kinetics in the same cell | Type-2 CD8+ T lymphocytes responsive to PGD2 and LTE4 in severe eosinophilic asthma | 2018 |
| Analyze mRNA expression at the single-cell level | Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells | 2018 |
| Analyze mRNA expression at the single-cell level | Secretion of autoimmune antibodies in the human subcutaneous adipose tissue | 2018 |
| Evaluate viral RNA in infected cells | Attenuation of Simian Varicella Virus Infection by Enhanced Green Fluorescent Protein in Rhesus Macaques | 2018 |
| Analyze mRNA expression at the single-cell level | Tracking KLRC2 (NKG2C)+ memory-like NK cells in SIV+ and rhCMV+ rhesus macaques | 2018 |
| Analyze RNA and protein kinetics in the same cell | Prospectively Isolated Tetraspanin+ Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration | 2018 |
| Evaluate viral RNA in infected cells | Tools for Visualizing HIV in Cure Research | 2018 |
| Analyze mRNA expression at the single-cell level | Single-cell mRNA profiling reveals heterogeneous combinatorial expression of Hoxd genes during limb development | 2018 |
| Evaluate viral RNA in infected cells | Uninfected Bystander Cells Impact the Measurement of HIV-Specific Antibody-Dependent Cellular Cytotoxicity Responses | 2018 |
| Analyze RNA and protein kinetics in the same cell | MicroRNA networks associated with active systemic juvenile idiopathic arthritis regulate CD163 expression and anti‐inflammatory functions in macrophages through two distinct mechanisms | 2018 |
| Analyze RNA and protein kinetics in the same cell | NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control | 2018 |
| Evaluate viral RNA in infected cells | The RNA surveillance proteins UPF1, UPF2 and SMG6 affect HIV-1 reactivation at a post-transcriptional level | 2018 |
| Analyze mRNA expression at the single-cell level | Fatty acid metabolism complements glycolysis in the selective regulatory T cell expansion during tumor growth | 2018 |
| Analyze RNA and protein kinetics in the same cell | RNA Flow Cytometry Using the Branched DNA Technique | 2018 |
| Analyze RNA and protein kinetics in the same cell | TCRβ combinatorial immunoreceptor expression by neutrophils correlates with parasite burden and enhanced phagocytosis during a Plasmodium berghei ANKA malaria infection | 2018 |
| Analyze mRNA expression at the single-cell level | T cell cytolytic capacity is independent of initial stimulation strength | 2018 |
| Analyze RNA and protein kinetics in the same cell | Progressive lentivirus infection induces natural killer cell receptor-expressing B cells in the gastrointestinal tract | 2018 |
| Evaluate viral RNA in infected cells | Infection of epididymal epithelial cells and leukocytes drives seminal shedding of Zika virus in a mouse model | 2018 |
| Analyze mRNA expression at the single-cell level | The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages | 2018 |
| Evaluate viral RNA in infected cells | Immature particles and capsid-free viral RNA produced by Yellow fever virus-infected cells stimulate plasmacytoid dendritic cells to secrete interferons | 2018 |
| Detect microRNA (miRNA) | MicroRNA Dysregulation in Lung Injury: The Role of the miR-26a/EphA2 Axis in 2 Regulation of Endothelial Permeability | 2018 |
| Analyze RNA and protein kinetics in the same cell | TCRβ-expressing macrophages induced by a pathogenic murine malaria correlate with parasite burden and enhanced phagocytic activity | 2018 |
| Analyze mRNA expression at the single-cell level | Sequestration of T cells in bone marrow in the setting of glioblastoma and other intracranial tumors | 2018 |
| Analyze RNA and protein kinetics in the same cell; Detect microRNA (miRNA) | Increased Binding of Specificity Protein 1 to the IL21R Promoter in B Cells Results in Enhanced B Cell Responses in Rheumatoid Arthritis | 2018 |
| Analyze mRNA expression at the single-cell level | Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development | 2018 |
| Analyze mRNA expression at the single-cell level | The Long Non-coding RNA Flatr Anticipates Foxp3 Expression in Regulatory T Cells | 2018 |
| Analyze mRNA expression at the single-cell level | Visualization of HIV-1 RNA Transcription from Integrated HIV-1 DNA in Reactivated Latently Infected Cells | 2018 |
| Analyze RNA and protein kinetics in the same cell | IL-6 Promotes T Cell Proliferation and Expansion under Inflammatory Conditions in Association with Low-Level RORγt Expression | 2018 |
| Detect microRNA (miRNA) | Detection and Differentiation of Multiple Viral RNAs Using Branched DNA FISH Coupled to Confocal Microscopy and Flow Cytometry | 2018 |
| Analyze mRNA expression at the single-cell level | Gene expression variability across cells and species shapes innate immunity | 2018 |
| Analyze RNA and protein kinetics in the same cell | HVEM and CD160: Regulators of Immunopathology During Malaria Blood-Stage | 2018 |
| Analyze mRNA expression at the single-cell level | Cell-intrinsic Wnt4 controls early cDC1 commitment and suppresses development of pathogen-specific Type 2 immunity | 2018 |
| Evaluate viral RNA in infected cells | Frequency of bovine viral diarrhea virus detected in subpopulations of peripheral blood mononuclear cells in persistently infected animals and health outcome | 2018 |
| Analyze RNA and protein kinetics in the same cell | CD19-positive antibody-secreting cells provide immune memory | 2018 |
| Detect microRNA (miRNA) | Functional pathways regulated by microRNA networks in CD8 T‐cell aging | 2018 |
| Analyze RNA and protein kinetics in the same cell | Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury | 2018 |
| Analyze mRNA expression levels when antibody is limited | The prostaglandin D2 receptor CRTH2 regulates accumulation of group 2 innate lymphoid cells in the inflamed lung | 2015 |
| Analyze mRNA expression levels when antibody is limited | Phenotypic and functional characterization of the major lymphocyte populations in the fruit-eating bat Pteropus alecto | 2016 |
| Analyze mRNA expression levels when antibody is limited | A Leukocyte Immune-Type Receptor Subset Is a Marker of Antiviral Cytotoxic Cells in Channel Catfish, Ictaluruspunctatus | 2016 |
| Analyze mRNA expression at the single-cell level | Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity | 2015 |
| Analyze mRNA expression at the single-cell level | A Model System for the Study of Gene Expression in the Undergraduate Laboratory | 2016 |
| Analyze mRNA expression at the single-cell level | Analysis of EZH2 expression in regulatory T-cells | 2017 |
| Analyze mRNA expression at the single-cell level | HLA-DR expression variations on human regulatory T cells is associated with impaired immune tolerance | 2017 |
| Analyze mRNA expression at the single-cell level | Cancer‐related mRNA expression analysis using a novel flow cytometry‐based assay | 2017 |
| Analyze mRNA expression at the single-cell level | Differential in vivo activation of monocyte subsets during low-grade inflammation through experimental endotoxemiain humans | 2016 |
| Analyze mRNA expression at the single-cell level | Sex differences in plasmacytoiddendritic cell levels of IRF5 drive higher IFN-α production in women | 2015 |
| Analyze mRNA expression at the single-cell level | Immunosuppressive plasma cells impede T-cell-dependent immunogenic chemotherapy | 2015 |
| Analyze mRNA expression at the single-cell level | Dectin-1 activation unlocks IL12A expression and reveals the TH1 potency of neonatal dendritic cells | 2015 |
| Analyze mRNA expression at the single-cell level | FANCA knockout in human embryonic stem cells causes a severe growth disadvantage | 2014 |
| Compare RNA and protein kinetics in the same cell | Measurement of Low-Abundance Intracellular mRNA Using Amplified FISH Staining and Image-Based Flow Cytometry | 2016 |
| Compare RNA and protein kinetics in the same cell | Aryl Hydrocarbon Receptor Activation Suppresses EBF1 and PAX5 and Impairs Human B Lymphopoiesis | 2017 |
| Compare RNA and protein kinetics in the same cell | Consumption of a High-Fat, High-Calorie Meal is Associated with an Increase in Intracellular Co-localization of PPAR-γ mRNA and Protein in Monocytes | 2017 |
| Compare RNA and protein kinetics in the same cell | Affinity and dose of TCR engagement yield proportional enhancer and gene activity in CD4+ T cells | 2016 |
| Compare RNA and protein kinetics in the same cell | Simultaneous, Single-Cell Measurement of Messenger RNA, Cell Surface Proteins, and Intracellular Proteins | 2016 |
| Compare RNA and protein kinetics in the same cell | Using Image-Based Flow Cytometry with FISH-Based Flow RNA Assay to Simultaneously Detect Intracellular TNF-α Protein and mRNA in Monocytes Following LPS Stimulation | 2015 |
| Compare RNA and protein kinetics in the same cell | Measurements of CD34+/CD45-dim stem cells predict healing of diabetic neuropathic wounds | 2016 |
| Compare RNA and protein kinetics in the same cell | Human mast cells are major IL-22 producers in patients with psoriasis and atopic dermatitis | 2015 |
| Compare RNA and protein kinetics in the same cell | Unipotent megakaryopoietic pathway bridging hematopoietic stem cells and mature megakaryocytes | 2015 |
| Compare RNA and protein kinetics in the same cell | B10 cell Frequencies and suppressive capacity in Myasthenia gravis are associated with Disease severity | 2017 |
| Compare RNA and protein kinetics in the same cell | Phenotypic and functional characteristics of HLA-DR+ neutrophils in Brazilians with cutaneous leishmaniasis | 2017 |
| Compare RNA and protein kinetics in the same cell | Germinal center B cell development has distinctly regulated stages completed by disengagement from T cell help | 2017 |
| Compare RNA and protein kinetics in the same cell | Human lung tumor FOXP3+ Tregs upregulate four “Treg-locking” transcription factors | 2017 |
| Detect microRNA (miRNA) | MicroRNA-302d targets IRF9 to regulate the IFN-induced gene expression in SLE | 2017 |
| Detect microRNA (miRNA) | High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry | 2014 |
| Evaluate viral RNA in infected cells | Kinetics of HIV-1 latency reversal quantified on the single cell level using a novel flow-based technique | 2016 |
| Evaluate viral RNA in infected cells | Single-cell characterization of viral translation-competent reservoirs in HIV-infected individuals | 2016 |
| Evaluate viral RNA in infected cells | A Novel Single-Cell FISH-Flow Assay Identifies Effector Memory CD4+ T cells as a Major Niche for HIV-1 Transcription in HIV-Infected Patients | 2017 |
| Evaluate viral RNA in infected cells | Kinetics of HIV-1 Latency Reversal Quantified on the Single-Cell Level Using a Novel Flow-Based Technique | 2016 |
| Evaluate viral RNA in infected cells | Multiparametric characterization of rare HIV-infected cells using an RNA-flow FISH technique | 2017 |
| Evaluate viral RNA in infected cells | Single-cell tracking of flavivirus RNA uncovers species-specific interactions with the immune system dictating disease outcome | 2017 |
| Evaluate viral RNA in infected cells | Improved detection of bovine viral diarrhea virus in bovine lymphoid cell lines using PrimeFlow RNA assay | 2017 |
| Evaluate viral RNA in infected cells | Persistent KSHV Infection Increases EBV-Associated Tumor Formation In Vivo via Enhanced EBV Lytic Gene Expression | 2017 |
| Evaluate viral RNA in infected cells | Understanding the role of Epstein-Barr virus in T-and NK-cell disorders | 2016 |
| Evaluate viral RNA in infected cells | The Alphabet Soup of HIV Reservoir Markers | 2017 |
| Evaluate viral RNA in infected cells | Highlights from the seventh international workshop on HIV persistence during therapy, 8–11 December 2015, Miami, Florida, USA | 2016 |
| Evaluate viral RNA in infected cells | Current views on HIV-1 latency, persistence, and cure | 2017 |
| Evaluate viral RNA in infected cells | RNA flow cytometric FISH for investigations into HIV immunology, vaccination and cure strategies | 2017 |
| Evaluate viral RNA in infected cells | FISHing Out the Hidden Enemy: Advances in Detecting and Measuring Latent HIV-Infected Cells | 2017 |
| Validate the single-cell RNA sequencing results by PrimeFlow | Brain trauma elicits non-canonical macrophage activation states | 2016 |
